Soma Naturopathic

Naturopathic Digestive Health Treatment — Root-Cause Approach to Gut Health

In Brief

Naturopathic digestive health treatment goes beyond symptom suppression to identify and treat the root causes of gut issues — including dysbiosis, food sensitivities, SIBO, intestinal permeability, and stress-related gut dysfunction. Dr. Sanika Kshirsagar, ND, at Soma Naturopathic in Kirkland, WA uses comprehensive functional testing (GI-MAP, food sensitivity panels, SIBO breath tests), clinical nutrition, targeted botanical medicine, and gut healing protocols to resolve IBS, chronic bloating, GERD, constipation, and other digestive conditions.

ApproachNaturopathic Digestive TreatmentStandard Conventional Treatment
TestingGI-MAP, SIBO breath test, food sensitivity panel, nutrientsEndoscopy, colonoscopy, basic blood work
IBS treatmentIdentify root cause (SIBO, food triggers, stress) and treat specificallySymptom management (antispasmodics, fiber, low FODMAP)
GERD treatmentAddress root cause (low acid, food triggers, hiatal hernia)Long-term PPIs (acid suppression)
Bloating treatmentTest for SIBO, dysbiosis, food sensitivitiesSimethicone, dietary advice
Microbiome assessmentComprehensive stool analysis (GI-MAP)Rarely performed
Nutrition planPersonalized therapeutic diet based on testingGeneral dietary advice
Gut healingL-glutamine, zinc carnosine, DGL, targeted probioticsNot typically addressed
Gut-brain connectionActively addressed (stress, adaptogens, vagal tone)Acknowledged but rarely treated
Visit length60 min initial / 30 min follow-up10-15 min typical

Why Digestive Issues Are So Common — and So Often Mismanaged

Digestive complaints are among the most common reasons patients seek naturopathic care. Conditions like IBS, chronic bloating, GERD, and food sensitivities affect millions of people, yet conventional treatment often focuses on symptom suppression — antacids for reflux, laxatives for constipation, anti-diarrheal medications for IBS — without investigating why these symptoms exist. The gut is far more than a digestive organ. It houses 70-80% of the immune system, produces 90% of the body's serotonin, plays a critical role in hormone metabolism, and communicates directly with the brain through the gut-brain axis. When gut health is compromised, the effects extend far beyond digestion — affecting mood, energy, skin health, hormonal balance, immune function, and even thyroid health. Naturopathic medicine recognizes these interconnections and treats digestive conditions by identifying and addressing their root causes, not just managing symptoms.

Common Root Causes of Digestive Dysfunction

Naturopathic digestive assessment investigates: • Gut microbiome imbalances (dysbiosis) — An overgrowth of harmful bacteria, yeast, or parasites, or a depletion of beneficial bacteria, can drive bloating, gas, irregular bowel habits, and systemic inflammation. Functional stool testing (GI-MAP) can identify specific microbial imbalances. • Small Intestinal Bacterial Overgrowth (SIBO) — Bacteria that normally reside in the large intestine migrate into the small intestine, fermenting food and producing excess gas. SIBO is a common underlying cause of IBS, particularly the bloating-dominant type. Breath testing can diagnose hydrogen and methane-producing SIBO. • Food sensitivities — Distinct from food allergies, sensitivities cause delayed immune reactions (IgG-mediated) that produce digestive symptoms, skin issues, headaches, and fatigue hours to days after eating trigger foods. Common triggers include gluten, dairy, eggs, soy, and corn. • Low stomach acid (hypochlorhydria) — Contrary to popular belief, many cases of heartburn and GERD are caused by INSUFFICIENT stomach acid rather than excess. Low acid impairs protein digestion, mineral absorption, and allows bacterial overgrowth in the stomach and small intestine. • Intestinal permeability ('leaky gut') — Damage to the intestinal lining allows partially digested food particles and bacterial components to enter the bloodstream, triggering immune reactions and systemic inflammation. Caused by chronic stress, NSAIDs, antibiotics, alcohol, and inflammatory foods. • Stress and the gut-brain axis — Chronic stress directly alters gut motility, secretion, barrier function, and microbiome composition through the vagus nerve and HPA axis.

Naturopathic Treatment Strategies for Digestive Health

Naturopathic digestive treatment follows a systematic approach: • Comprehensive Testing — GI-MAP stool analysis for microbiome composition, pathogens, and digestive markers. SIBO breath test for hydrogen and methane. Food sensitivity panels. Comprehensive metabolic panel. Testing guides treatment rather than guessing. • Remove — Eliminate identified triggers: food sensitivities, pathogenic bacteria, yeast overgrowth, parasites, and environmental irritants. Antimicrobial botanical protocols (berberine, oregano oil, garlic) are used when indicated. • Replace — Support deficient digestive functions: digestive enzymes for impaired digestion, betaine HCl for low stomach acid, bile acid support for fat malabsorption. • Reinoculate — Restore beneficial bacteria with targeted probiotic strains (species and strain-specific, based on testing results), prebiotic fiber, and fermented foods appropriate for the patient's condition. • Repair — Heal the intestinal lining with L-glutamine, zinc carnosine, aloe vera, deglycyrrhizinated licorice (DGL), and bone broth. Address intestinal permeability to reduce systemic inflammation. • Rebalance — Address lifestyle factors: stress management, sleep optimization, mindful eating practices, regular movement, and ongoing dietary optimization.

Conditions Treated with Naturopathic Digestive Care

Dr. Sanika treats a wide range of digestive conditions at Soma Naturopathic: • Irritable Bowel Syndrome (IBS) — Both diarrhea-predominant (IBS-D) and constipation-predominant (IBS-C) subtypes. Naturopathic treatment identifies specific drivers (SIBO, food sensitivities, stress, dysbiosis) for targeted intervention. • Chronic Bloating — Persistent bloating that doesn't resolve with dietary changes alone often has underlying causes (SIBO, carbohydrate malabsorption, dysbiosis) that require functional testing to identify. • GERD and Heartburn — Addressing root causes (low stomach acid, hiatal hernia, obesity, food triggers) rather than relying on long-term acid suppression, which can worsen nutrient absorption and dysbiosis. • Constipation — Identifying drivers: dehydration, magnesium deficiency, thyroid dysfunction, pelvic floor dysfunction, SIBO methane-dominant, or inadequate fiber. Treatment addresses the specific cause. • Food Sensitivities — Systematic identification through testing and elimination protocols, followed by gut healing to reduce reactivity and enable safe food reintroduction. • Post-antibiotic Digestive Issues — Microbiome restoration after antibiotic use through targeted probiotic protocols and dietary support.

Digestive Health Treatment at Soma Naturopathic

Dr. Sanika Kshirsagar at Soma Naturopathic in Kirkland, WA (12911 120th Ave NE, Suite J-3) has advanced gastrointestinal training from Dr. Lela Altman and specializes in root-cause digestive health treatment. Her digestive health program includes: • Comprehensive health history with focus on dietary patterns, bowel habits, symptom timeline, and previous treatments • Functional stool testing (GI-MAP) to assess microbiome, pathogens, and digestive markers • SIBO breath testing when indicated • Food sensitivity panel when dietary triggers are suspected • Personalized nutrition plan — therapeutic elimination diet or specific dietary protocol based on test results • Botanical antimicrobial or antifungal protocols when testing reveals overgrowth • Gut healing supplement protocol (L-glutamine, zinc carnosine, probiotics) • Ongoing monitoring and protocol adjustment Dr. Sanika also addresses the interconnections between gut health and hormones — a critical link for women experiencing both digestive and hormonal symptoms. New patients can schedule a free 15-minute intro call. Soma Naturopathic serves Kirkland, Bellevue, Redmond, Bothell, Woodinville, Kenmore, Sammamish, and Issaquah, with telehealth available for Washington and California residents.

Frequently Asked Questions

What is a GI-MAP test and why is it useful?

The GI-MAP (Gastrointestinal Microbial Assay Plus) is a comprehensive DNA-based stool test that identifies bacterial, parasitic, and viral pathogens, assesses beneficial bacteria levels, evaluates digestive function markers (elastase, fat absorption), and measures intestinal inflammation (calprotectin) and immune markers. Unlike standard stool cultures, the GI-MAP uses PCR technology for higher sensitivity. This test provides a detailed picture of gut health that guides personalized treatment protocols.

How do I know if I have SIBO?

Common SIBO symptoms include bloating (especially after eating), excessive gas, abdominal distension, diarrhea or constipation (or alternating), and nausea. SIBO is diagnosed through a lactulose or glucose breath test that measures hydrogen and methane gases produced by bacteria. Many patients diagnosed with IBS actually have underlying SIBO. Dr. Sanika orders breath testing when SIBO is suspected based on symptom patterns.

Can naturopathic treatment help GERD without long-term acid medications?

In many cases, yes. Naturopathic treatment for GERD investigates root causes: low stomach acid (which paradoxically causes reflux symptoms), food triggers, hiatal hernia, excess weight, and timing of meals. By addressing these factors through dietary modifications, digestive support (betaine HCl, digestive enzymes), and gut healing protocols, many patients can reduce or eliminate their need for PPIs. However, this should be done gradually and under medical supervision — abrupt PPI discontinuation can cause rebound acid production.

How long does gut healing take?

The timeline depends on the condition's severity and underlying causes. Simple food sensitivity cases may resolve in 4-6 weeks with elimination and gut healing protocols. SIBO treatment typically requires 4-8 weeks of antimicrobial therapy followed by 2-3 months of gut restoration. Chronic conditions like long-standing IBS or severe dysbiosis may take 3-6 months for full resolution. Dr. Sanika provides realistic timeline expectations and monitors progress through symptom tracking and follow-up testing.

Why does Dr. Sanika have advanced gastrointestinal training?

Dr. Sanika completed advanced gastrointestinal training with Dr. Lela Altman, a recognized expert in naturopathic gastroenterology. This specialized training covers advanced SIBO management, complex dysbiosis treatment, functional stool analysis interpretation, and the intricate connections between gut health and systemic conditions — particularly hormonal health. This training enhances her ability to treat complex digestive cases that haven't responded to standard interventions.

Related Conditions We Treat

Treatment Modalities

Ready to Take the Next Step?

Schedule a free 15-minute intro call with Dr. Sanika to discuss your health concerns.

Schedule Now

References

  1. 1.
  2. 2.
  3. 3.
  4. 4.
Dr. Sanika Kshirsagar

Dr. Sanika Kshirsagar, ND

Doctorate of Naturopathic Medicine (ND)

Bastyr University, Kenmore, WA

Last reviewed:byDr. Sanika Kshirsagar, ND